parm rhomean rhomode sesand sehess seinfo 1 0.0014735 0.0014801 4.5267e-05 2 0.0021208 0.002121 9.1538e-05 3 6.8666e-05 6.9618e-05 4.6144e-06 4 0.0010812 0.0010681 0.00018779 5 0.99028 0.9903 0.000223 6 0.99236 0.99249 0.00032668 7 2.2797 2.2344 0.087966 8 -3.246 -3.2461 0.024709 The log posterior (log prior - objfun) at the mode is -322.47. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.