parm rhomean rhomode sesand sehess seinfo 1 -0.0012913 -0.054178 0.036075 2 0.016278 0.068508 0.033639 3 1.3569 1.2104 0.076328 4 0.078435 0.087976 0.032097 5 0.071985 0.029311 0.022153 6 -0.0225 -0.03908 0.029677 The log posterior (log prior - objfun) at the mode is -163.42. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.