parm rhomean rhomode sesand sehess seinfo 1 0.080691 0.08149 0.030934 2 0.022287 0.026018 0.027921 3 0.056331 0.072806 0.11504 4 0.90701 0.93446 0.044925 5 0.19285 0.18298 0.025874 6 0.12922 0.1546 0.080424 The log posterior (log prior - objfun) at the mode is -8.7241. For EMM, if usrmod.prior returns only 0 or 1, objfun is a chi-square on ltheta - 1 - lrho degrees of freedom. See SNP parmfile for ltheta.